By Aidong Zhang

ISBN-10: 9812566457

ISBN-13: 9789812566454

This booklet is especially good written, in nice aspect and readability. The identify "Advanced" sounds formidable to a few intermediate or access point statisticians, however the math info within the ebook is especially comprehensible, awarded as priceless help that allows you to comprehend the defined statistical equipment.
I might hugely suggest this ebook to statisticians with all statistical backgrounds who're new to the realm of microarray information research. This booklet is ideal as a textbook for a primary process microarray info research too.

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Extra resources for Advanced analysis of gene expression microarray data

Example text

In the double-stranded structure of DNA, each strand maintains its own orientation, with the 5' end of one strand aligning with the 3' end of the other strand. In other words, the two strands are antiparallel. As a consequence, it is possible to infer 22 Advanced Analysis of Gene Expression Microarray Data the sequence of one strand if we know the sequence of the other through an operation called reverse complementation. For example, given strand s — AGCTAAC in the 5'—>3' direction, we first reverse s, obtaining s' = C A A T C G A , and then replace each base by its complement, obtaining s = GTTAGCT, which is the reverse compliment of s [249].

4) Replace each measurement on each array with the corresponding average in the new distribution according to its rank.

Generally, Cy5 (red) intensities tend to be higher than Cy3 (green) intensities, but the magnitude of the difference generally depends on the overall intensity [10]. The reasons for the imbalance between the channels are as follows [266]: • The Cy3 and Cy5 labels may be differentially incorporated into DNA samples with varying frequencies of occurrence. • The Cy3 and Cy5 dyes may have different emission responses to the excitation laser at different frequencies of occurrence. • The Cy3 and Cy5 emissions may be differentially measured by the photomultiplier tube at different intensities.

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Advanced analysis of gene expression microarray data by Aidong Zhang


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